After applying the security patch some of my custom modules are not working, I have not checked others but 2 of them are definitely not working.
I found the file which affects my modules is the admin/includes/auto_loaders/config.security_patch_v138_20090619.php .
Deleting the above file makes my modules work .
What do I do so that my modules do not get affected by this patch.
Any help will be appreciated.