I'm using ZenCart 1.3.7 and have SuperOrders plus several other addons installed.

I found out I was hacked so have renamed my admin directory and installed the various security patches for this ZenCart version. But now I have a problem in that Customers show up and can create an account. They can place an order and it shows up in PayPal, but it doesn't show up in their website accounts or in my admin area. I cannot find what file I need to change or that got changed so that the orders register again and the customer gets his/her confirmation email. Help me please.