In the dist-configure files you have
define('DIR_FS_CATALOG', '/');
//the following path is a COMPLETE path to the /logs/ folder eg: /var/www/vhost/accountname/public_html/store/logs ... and no trailing slash
define('DIR_FS_LOGS', DIR_FS_CATALOG . '/logs');
Entering the full path in 'DIR_FS_CATALOG with the trailing / creates a double slash in the logs directory path.
define('DIR_FS_LOGS', DIR_FS_CATALOG . '/logs');
should be
define('DIR_FS_LOGS', DIR_FS_CATALOG . 'logs');
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