JROX working without commissions

[helpme]

I have been working at this on and off for months now, but it is getting to a point that I really need to get it working! I have everything set up and working, but I am not getting any commissions issued. I have used both the code from the JROX website and the new code on this forum, neither one will pass through the checkout when I put the code in the tpl_footer and upload it to templates/my_template/checkout_success/tpl_footer.php I have tried putting the code in different places, everything, but nothing works. I also can not see the code when I checkout by viewing the source. I have used the override system before and never had any trouble with my templete.
I can get the commissions to track if I put the code into the modules/pages/checkout_success/header file but it throws the rest of my checkout success page off.
I am getting desprite now, anyone have any idea what it could be.
I have checked the config file and everything is correct including the cookies domain.
I am using 1.3.8a with the latest jrox
PLEASE, PRETTY PRETTY PLEASE :)