Great! Dont worry about things that you dont need. Just deactivate them.
You can easily disable the right column in the Admin Configuration > ... > Disable Left Sidebox Globally or just dont activate any sidebox on the left column.
Your customizations fall under your so called "just header and color scheme variations" category.
1 + 2 can be changed in the stylesheet.
3. is in the Admin section of your shopping cart.
Excellent! Don't assign a color for the columns in your stylesheet.
I wonder why. How far have you gotten with your customization? Maybe post a link of your website.
Now, I dont know which carts you have seen, but many websites have customized their Zencart a lot and they look very nice.
You are strongly encouraged to try other shopping carts to learn your own lesson about individual customization.
Apart from the left sidebox no showing, the rest is more or less CSS customisation, smart use of images and moving sections of php code in template files to suit your individual website arrangements.




