Easy populate is ok, but your first thought was best IMO.
You likely missed the category related tables when you exported. There are quite a few tables to export.
I would drop the existing imported tables and re-import the following tables.
categories
categories_description
manufacturers
manufacturers_info
meta_tags_products_description
products
products_attributes
products_attributes_download
products_description
products_discount_quantity
products_options
products_options_values
products_options_values_to_products_options
products_to_categories
product_types_to_category
Just the basic, if using special product types or media you will need those as well.
Then to change the prefixes something like below for each
Code:
ALTER TABLE categories RENAME TO zen_categories;
~Melanie