Let's say you edited
includes/languages/english/shopping.cart.php
without using the overrides system. Then in the next version, this file gets upgraded. If you just upload all the files which were changed in the new version, you will overwrite your changes and lose them.
To prevent this, create a directory using the name of your template (let's say it's YOUR_TEMPLATE):
includes/languages/english/YOUR_TEMPLATE
then copy
includes/languages/english/shopping.cart.php
to
includes/languages/english/YOUR_TEMPLATE/shopping.cart.php
For completeness, yes, restore the original
includes/languages/english/shopping.cart.php
from a fresh download. That way, if this file changes in a future release, you can just compare the copy you have with the new copy and apply these changes to
includes/languages/english/YOUR_TEMPLATE/shopping.cart.php



