So got it to work so I didn't get the 404 permission denied. The .htaccess file was updated to this (just in case someone else has this issue):

Code:
# deny *everything*
<FilesMatch ".*\..*">
  Order Allow,Deny
  Deny from all
</FilesMatch>

# but now allow just *certain* necessary files:
<FilesMatch "(^$|^favicon.ico$|.*\.(php|js|css|jpg|gif|png|pdf)$)">
  Order Allow,Deny
  Allow from all
</FilesMatch>
And it was working fine for about two days. Now I have new problem it has decided to stop printing the sold to address and the ship to address on my packing slips and invoices.

The labels still pull through the address but so some reason the packing slip and invoice don't.

This is driving me crazy I love the pdf order center I just want it to work. Please help!