Although stated that using easypopulate-4.0-master, that doesn't provide the version number associated with the install which could be important in relation to what is happening.
My guess though from the provided information is that when importing the single file that contains what looks like ~4,000 rows of data, is that the import timed out and only what had been transferred to that point survived/was written. When such an issue occurs there are several options made available by the software (though some servers may not support all built in options). For one, the import file can be split at a pre-determined number of rows per file. (this is one that is an option that is not so server dependent). The timeout period can be extended for EP4 as well as for ZC; however, some server configurations may not respect the request to extend those durations.
The other possibility is that the content of these descriptions includes characters (however non-special they may be) that need to be escaped such as quoted content. Or perhaps as experienced above the file was not saved as utf8 and therefore some of the character codes while not exactly "special" were incompatible with the character set used by EP4.
Then there is the debug.txt file that may exist in the EP4 file storage directory. If it is present, then at some point since it was last removed there was a problem with an import file. Recommendation would be to download it for temporary keeping, delete the file from the server and attempt to import a "trouble" file and see if it gets generated again. If so, then address that issue.
As to version information again, when in the tools->EP4 window the upper left area should identify a version number. Please provide that for information.


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