Seeing your site live would be the best way of accurately diagnosing your issue, but I suspect that what you are seeing is the default HTML link color of blue. This is the case for these areas in Zen Cart's default Classic template, but should be handled appropriately (by explicitly styling those links) by any template that uses different backgrounds for these areas. So we need to see it to be sure of the exact answer.
It doesn't matter what color you assign to a container, links in it will be blue unless you tell them otherwise.
Code:
#navEZPagesTop a {color: #112233;}
Adjust to taste.