There is/was *nothing* in the log file that you posted that suggested that this was involved in any way. I acknowledge that it may have been further down in the log file (these can get quite large, and we don't need to see them all), but wasn't my 1st piece of advice:
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This looks like you have one or more 'corrupted' files. The error above is the 1st error you'll need to take care of, which may or may not take care of the errors that follow (these things have a cascading effect).
You'll need to work through the error messages one at a time 'cos you may have more than one problem.
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You have somehow managed to skip the error reported by 'session.php' error and gone of on a wild tangent with something that may or may not have been something that needed to be fixed separately from any previous fixes. If you wish to have any hope of a recovery you must work in precise *logical* steps. If you can't do that, then give up all recovery attempts now. It will be quicker to re-install a fresh system (keeping your existing database of course).
BIG MISTAKE. You should fix the problems you already have before adding more stuff that can only make matters worse.
I'm a wee bit surprised much of anything at all is working really. The sessions.php file (and the files that *it* loads, eg, query_factory.php) are essential for the store to function.
It is also for this reason you shouldn't go messing with things hoping to stumble across a fix. I fear that your store is in a very precarious state at the moment and that it could be reading some files from /public_html/2013update/includes/functions/sessions.php and some from /public_html/includes/functions/sessions.php, or any one of an infinite number of other variants/possibilities.
Yeah. Just delete them. New ones will be create is/when further errors occur.
This could be a matter of the shipping not being enabled in the modules->order_total settings.
Anyway, so exactly where are we up to now? From the way I'm reading things, I'm not sure exactly what you've done, but it now all seems to be working correctly (other than the final total addition?). If this isn't correct, please supply a copy of the first few entries and any 'new' error logs and we'll continue the debugging from there.
Cheers
Rod



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