Although the number of tables you have may be correct, it seems a little high to me. A 'typical' ZenCart installation only has ~110 tables.
It is *possible* for either of this things to be occurring, but it is quite unusual that if this is the case you aren't seeing any error messages.
Sorry, but I can't comment about this plugin. I've only ever used the phpmyadmin export/import method.
I will suggest that when you do the export (with phpmyadmin) that you select the option to compress the file, as this tends to take care of any timeout issues (the resulting files are up to 10times smaller). Also, if the files are compressed you'll avoid the possibility of any corruption with the import (unless the compressed file itself get corrupted, and if this does happen you'll be notified of the problem after the upload, but before any 'import' actually starts.
Another of the phpmyadmin export options is "Add Drop Table". If you enable this, then when the import is taking place any pre-existing tables will be dropped and recreated prior to the actual data being imported, which effectively gives you a 'clean' database (in practical terms, this is almost the same as creating a new database).
I'm not sure if any of this helps or not.
Cheers
RodG



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