No this is a live customer site. It has its own db, not shared and no other apps running. It's just too weird.
I was working with her trying to create a reference list for myself on what was "on" and what was "off" she is the manufacturer so she can control her stock. If something is no longer available, she turns the product off until it is available again. A good example are seasonal products. We never had this issue at all until I upgraded her to 1.3.7. Prior to that all was good.
We had a lot of products cross linked into two different directories. I spent the afternoon removing all the links and verifying that the master ids were in fact correct. Two products were disabled in another directory right while I was working. I knew there were 90 enabled products and when I looked there were 88.
I'm going to optimize the db and making sure all is set perfect again and then check again in the am and see what we have.



