Just verified what you said and it doesn't take into account the sale or speical price when giving reward points. Andy is that something that could be added?

In the mean time I will just not give any reward points to my clearance items and adjust the ratio for reward points on special items for now. I don't have that many items in my store since I manufacture everything I sell so it's not that big a deal for me, but could be for those with 1000's of products.