Would someone be able to help me, my quantity box is missing from the product page 'add to cart' section, and also on the cart contents/checkout you cant update quantity. I am not sure if this is a template issue (i have tried replacing original related php files, could someone maybe list them all) and have tried changing multiple admin config settings.

You can have a look at my working draft here:
http://www.exclusiveproducts.com.au/...&products_id=1

Also here is my config settings that i think relate.

Admin / Product Listing
Display Product Price/Add to Cart 3
Display Product Quantity 1
Display Product Add to Cart Button (0=off; 1=on; 2=on with Qty Box per Product) 2 Info
Display Multiple Products Qty Box Status and Set Button Location 3

Admin / Product Info
Product Quantity Box Status - Adding New Products 1

Your help is greatly appreciated, i have spent 1 week trying to fix this