If you are running v139, then try this
In includes/modules/order_totals/ot_group_pricing.php at around line 67 you should see a commented out line
PHP Code:
// if ($this->include_tax != "true" && $this->include_shipping != 'true') $order_total += $order->info['shipping_tax'];
and remove the // so the line is no longer commented, and test again.
Note. while I have tested this fix with some other variations of group discount and tax with no deleterious results, I have not tested enough combinations yet, to say whether its the correct fix for all use cases.
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