Okay, after some testing I will answer my own post...
To clarify this problem:
There is an issue with 1.3.6 whereby after new account creation during checkout, the customer is always redirected back to the create_account page rather than to the checkout_shipping page where they should go to complete the order process.
A quick fix for this issue was posted last Thursday
here.
If you install the latest version of Steven's sessionWatcher contrib., he has modified it to do the same thing as the patch, so you don't have to apply the patch.
If you have already applied the patch it's okay as it will have no effect.
So to summarize, either install the sessionWatcher contrib. (this gets my my vote), or the patch or both to correct this issue.
Hope this helps!
Jeff
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