Thanks, I just install a fresh copy to compare and it seems the only thing I was missing was EZ Pages, this is what's on the a clean install:

1 My Store General information about my store 1 1
2 Minimum Values The minimum values for functions / data 2 1
3 Maximum Values The maximum values for functions / data 3 1
4 Images Image parameters 4 1
5 Customer Details Customer account configuration 5 1
6 Module Options Hidden from configuration 6 0
7 Shipping/Packaging Shipping options available at my store 7 1
8 Product Listing Product Listing configuration options 8 1
9 Stock Stock configuration options 9 1
10 Logging Logging configuration options 10 1
11 Regulations Regulation options 16 1
12 E-Mail Options General settings for E-Mail transport and HTML E-M... 12 1
13 Attribute Settings Configure products attributes settings 13 1
14 GZip Compression GZip compression options 14 1
15 Sessions Session options 15 1
16 GV Coupons Gift Vouchers and Coupons 16 1
17 Credit Cards Credit Cards Accepted 17 1
18 Product Info Product Info Display Options 18 1
19 Layout Settings Layout Options 19 1
20 Website Maintenance Website Maintenance Options 20 1
21 New Listing New Products Listing 21 1
22 Featured Listing Featured Products Listing 22 1
23 All Listing All Products Listing 23 1
24 Index Listing Index Products Listing 24 1
25 Define Page Status Define Main Pages and HTMLArea Options 25 1
30 EZ-Pages Settings EZ-Pages Settings 30 1