To clarify this a little:
The behavior of what's displayed in the tax included columns is controlled here:
Admin >Configuration > My Store > Display Prices with Tax in Admin
This is DEFAULT Zen Cart behavior. Since SO3 (and all previous versions) are based on the default orders.php, the SO3 equivalent page, super_orders.php retains many of the same characteristics as it's default orders.php cousin.
The columns you see displayed in super_orders.php are the same columns displayed in orders.php
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