I have a quick question. I allow customers to pay using two methods on my site. Credit Card using Skipjack and PayPal.

When I get a new order using either of the methods this is what my order looks like:

Sub-Total: $11.00
USPS Media Mail: $3.57
Tax charged when shipped to Minnesota: $0.72
Total: $15.29
Amount Applied: $0.00
Balance Due: $15.29

Why is the amount applied not automatically filled out when using either of these methods when the payment has already been approved and received?

On the old Super Orders if someone payed with a CC the balance do was automatically set to 0. Am I missing something here?