QBI 3.x does not actually transfer the inventory numbers into QB, even though they are present in the iif file, because QB ignores them. To do that, QBI would also have to also create an inventory adjustment transaction to keep your accounting straight. You will need to adjust your starting inventories in Quickbooks yourself, by creating inventory adjustments or POs. I am looking at adding this ability to QBI 4.x.
Thanks,
Adam
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