Admin Profiles doesn't change users, but because it applies different access rules to different users, is good at highlighting these issues when they do arise.
There was a problem in earlier versions of Zen Cart (you don't say which version you are using) but which was fixed some time ago (there are posts about this very early in this thread). Or it could be that User Tracking is causing the problem - I've never used it so I wouldn't know. Either way, I'm afraid that Admin Profiles is merely highlighting the problem and is very unlikely to be the source of the solution.
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