Apologies, should have mentioned. To get lightbox to work I literally just ran this code to uninstall links manager... before I removed any LinksManager pages I tested lightBox - it worked perfectly, so it purely something incompatible with what the 2 sql codes do.
Alex, I hope this code helps to find the incompatibility issue...
Code:
#Links Manager SQL Uninstall
# For Zen-Cart 1.3.8
# Version: 3.5.0
# Updated: 1/7/2009
SET @configuration_group_id=0;
SELECT @configuration_group_id:=configuration_group_id
FROM configuration_group
WHERE configuration_group_title= 'Links Manager'
LIMIT 1;
DELETE FROM configuration WHERE configuration_group_id = @configuration_group_id;
DELETE FROM configuration_group WHERE configuration_group_id = @configuration_group_id;
DELETE FROM configuration WHERE configuration_key = 'DEFINE_LINKS_STATUS';
INSERT INTO `configuration` VALUES (NULL, 'Product option type Select', 'PRODUCTS_OPTIONS_TYPE_SELECT', '0', 'The number representing the Select type of product option.', 0, NULL, NULL, now(), NULL, NULL);
INSERT INTO `configuration` VALUES (NULL, 'Upload prefix', 'UPLOAD_PREFIX', 'upload_', 'Prefix used to differentiate between upload options and other options', 0, NULL, NULL, now(), NULL, NULL);
INSERT INTO `configuration` VALUES (NULL, 'Text prefix', 'TEXT_PREFIX', 'txt_', 'Prefix used to differentiate between text option values and other option values', 0, NULL, NULL, now(), NULL, NULL);
INSERT INTO `configuration` VALUES (NULL, 'Image Handler Version', 'IH_VERSION', '2.0', 'This is used by image handler to check if the database is up to date with uploaded image handler files.', 0, 100, NULL, now(), NULL, 'zen_cfg_textarea_small(');
DROP TABLE IF EXISTS `links_status`;
DROP TABLE IF EXISTS `links_to_link_categories`;
DROP TABLE IF EXISTS `link_categories`;
DROP TABLE IF EXISTS `link_categories_description`;
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