Please forgive me if this has already been addressed and feel free to send me to a specific post.

1.5.5f, php 5.6.4, version of easypopulate seems to be most recent.

I have a website that has several addon domains - all have zen cart and all are using this mod. In the addon domains which are in subfolders of the main domain, I can set the download directory to the site's root and it all works. I have had to set the primary domain to the admin folder instead like it's supposed to. No biggie but now that these sites have been upgraded to 1.5.5f, the primary domain does still export the files correctly but when you try to access the files, it says not found and they are there in the correct folder in admin.

I did find an htaccess file I must have put in long ago and removed it (without looking at it) but there is no change. Still can't "find" the file. The htaccess file for admin is not changed - using default 1.5.5f. The htaccess file for the primary domain does include the Ultimate SEO mod and a redirect for ssl.

What am I missing?