I'll try deleting everything and then reinstalling Links Manager.
One thing that might be affecting it, is when I had problems with my logo, someone created a new template override name for me (srs), and put the logo there. But I already had a template override name of my own. When I installed Links Manager, I wasn't sure where to put the files (in "srs" or my template name). Right now the files are in both places. But as I said, I'll try deleting everything and reinstalling in only one place at at time.
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