Hi,
I happened to be looking into URI issues for some of my new software (nothing to do with Zen Cart) and it brought up the subject of canonical URIs.. you might want to have a read about them (one link is
http://yoast.com/wordpress/canonical/ ).
You could update your html_header.php file to check if the current page is the home page and if so output the canonical <link> tag for the page.. that should make google see / /index.php and /index.php?main_page=index as the same page, negating the problem you were having.
Just thought I'd mention it while it was fresh in my mind!
All the best..
Conor
ceon
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