seen that. I went through it again and maybe this is the problem:
"If you use your PayPal™ account on non-Zen Cart™ sites or on eBay™, be sure that you have all "taxes" and "shipping" options disabled in your PayPal™ profile; otherwise these charges will be added to your Zen Cart™ orders and cause them to not match, and therefore they won't be released or added to your orders list. "
I have two versions of my site.
mysite.com has paypal generated buttons for each item and a shipping profile in paypal to charge shipping based on the order total.
And I have zen-cart set up at mysite.com/cart and am using paypal for payments.
This would seem to explain why the one order that I had in zen-cart that was a check/money order does show up as an order in admin.
Think this is the problem?