database upgrade issue to version to 1.3.9e

I did a database upgrade today from 1.3.9b to 1.3.9e and got the following message back:

SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot insert configuration_key "SHOW_SPLIT_TAX_CHECKOUT" because it already exists
SKIPPED: Cannot add index idx_prod_id_orders_id_zen to table orders_products because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.
SKIPPED: Cannot add index idx_cust_id_orders_id_zen to table orders because it already exists.

It also came up with: Could not rename all tables more info...
I am using the prefix zen_ but left the rename prefix blank.

Are these likely to cause any issues

Since it's still 1.3.9, all you're meant to do is change the files that are different from the changelogs in the /docs/ folder from the fileset.

ok
I changed the files, but thought I would update the databas to latest version also.
so I can just ignore these.

You can just ignore those.

You'll also note in the upgrade instructions specific to 1.3.9e that it says there's no need to do any database-upgrade step if you've already got a prior v1.3.9xx version installed.

So even though the DB Patch level says 1.3.9c, we are good since nothing changed in the DB? Just needing this additional clarification.

Thank you,

Denny

Correct.