Pookiehair: Hopefully you've discovered the location of the configure.php files by now. When you first install Zen Cart and answer the questions, the cart makes these files and places them as includes/configure.php (for the store seen by customers) and admin/includes/configure.php (for you in Admin). Before the cart is installed, I think these might be the files appearing as "dist.configure.php."
If you open those files after you have installed, you will see that the name of the Admin folder is seen in I believe 3 places in the admin/includes/configure.php. So, if you change your admin folder to have a secure name, you must also change the folder name in the admin/includes/configure.php to the now changed admin folder name.
The instructions ask you to change the permissions on these two files to non-writable after installation, and somewhere it instructs to save these files separately in case you need to restore them at some point. I have found that to be a most helpful recommendation.
I'm sure you have already discovered these recommendations, but I think they bear repeating for new users.
Notageek