Cache Settings Synchronization Tool messup my sites style

I followed the directions on this site to move a zecart from one server to anther. Everything seemed to look fine. As soon as i ran
Cache Settings Synchronization Tool my site site seemed to loose its style setting?

Here is the after https://www.skatopia-skateshop.com

here is the readout that the sync tool gave

Cache Settings Synchronization Tool

Recommendations

Possible appropriate cache directory for your site is: /home1/skatopia/public_html/cache

Actual Information

Read DIR_FS_SQL_CACHE from configure.php: /home1/skatopia/public_html/cache
Found SESSION_WRITE_DIRECTORY in database: /home1/skatopia/public_html/shop/cache

Now synchronizing...
**Database now contains the following SESSION_WRITE_DIRECTORY: ** /home1/skatopia/public_html/cache

Finished.
Security

PLEASE DELETE THIS FILE FROM YOUR SERVER NOW!!
Removing this file (fix_cache_key.php) from your server protects you from would-be hackers/predators who might seek to compromise your server.

So do I HAVE to run the **Cache Settings Synchronization Tool becuase my site seemed to run and look better before I ran it?
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After running **Cache Settings Synchronization Tool all of my links to products anything on my site return a 404 error.
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