If I understand you correctly i am using Easy Populate version 4.0.30 - Beta 06-27-2015. I exported the configurations from my database. Let me know if that is what you are looking for.
primary issue "that the products don't seem to be going in the categories but seems to be linking with the yellow mark as "link products"
*Configuration setting
2673 Show all EP4 Filetypes with Files EP4_SHOW_ALL_FILETYPES TRUE When looking at the EP4 Tools screen, should the filename prefix for all specific file types be displayed for all possible file types (True [default]), should only the method(s) that will be used to process the files present be displayed (False), or should there be no assistance be provided on filenaming on the main page (Hidden) like it was until this feature was added? (True, False, or Hidden) 91 25 NULL 10/22/2015 2:02 NULL zen_cfg_select_option(array("True", "False", "Hidden"), General
2672 Export URI with Prod and or Cat EASYPOPULATE_4_CONFIG_EXPORT_URI 0 Export the current products or categories URI when exporting data? (Yes - 1 or no - 0) 91 19 10/22/2015 2:11 10/22/2015 2:02 NULL zen_cfg_select_option(array("0", "1"), General
2670 Enable Products Music Data EASYPOPULATE_4_CONFIG_MUSIC_DATA 0 Enable Products Music Data Columns (default 0).<br><br>0=Disable<br>1=Enable 91 17 NULL 10/22/2015 2:02 NULL zen_cfg_select_option(array("0", "1"), General
2671 User Defined Products Fields EASYPOPULATE_4_CONFIG_CUSTOM_FIELDS voltage,length,width,thickness,cost User Defined Products Table Fields (comma delimited, no spaces) 91 18 10/22/2015 2:03 10/22/2015 2:02 NULL NULL General
2669 Enable Products Meta Data EASYPOPULATE_4_CONFIG_META_DATA 1 Enable Products Meta Data Columns (default 1).<br><br>0=Disable<br>1=Enable 91 16 NULL 10/22/2015 2:02 NULL zen_cfg_select_option(array("0", "1"), General
2668 Convert Character 0x92 EASYPOPULATE_4_CONFIG_CHAR_92 1 Convert Character 0x92 characters in Product Names & Descriptions (default 1).<br><br>0=No Change<br>1=Replace with Standard Single Quote<br>2=Replace with HMTL equivalant 91 15 NULL 10/22/2015 2:02 NULL zen_cfg_select_option(array("0", "1", "2"), General
2667 Convert Curly Quotes, etc. EASYPOPULATE_4_CONFIG_CURLY_QUOTES 0 Convert Curly Quotes, Em-Dash, En-Dash and Ellipsis characters in Products Description (default 0).<br><br>0=No Change<br>1=Replace with Basic Characters<br>3=Replace with HMTL equivalants 91 14 NULL 10/22/2015 2:02 NULL zen_cfg_select_option(array("0", "1", "2"), General
2666 Script Execution Time EASYPOPULATE_4_CONFIG_EXECUTION_TIME 6000 Number of seconds for script to run before timeout. May not work on some servers. (default: 60). 91 13 10/22/2015 2:03 10/22/2015 2:02 NULL NULL General
2665 Split On Number of Records EASYPOPULATE_4_CONFIG_SPLIT_RECORDS 2000 Number of records to split csv files. Used to break large import files into smaller files. Useful on servers with limited resourses. (default: 2000). 91 12 NULL 10/22/2015 2:02 NULL NULL General
2664 Maximum Quantity Discounts EASYPOPULATE_4_CONFIG_MAX_QTY_DISCOUNTS 3 Maximum number of quantity discounts (price breaks). Is the number of discount columns in downloaded file (default: 3). 91 11 NULL 10/22/2015 2:02 NULL NULL General