I tried it again, and it looks like both the sideboxes and the order total modules are there.
I am getting one error now when running the sql patch:

PHP Fatal error: 1062uplicate entry '0-0' for key 2 :: INSERT INTO zen_reward_master (rewards_products_id ,scope ,scope_id ,point_ratio ,bonus_points, redeem_ratio, redeem_points) VALUES (NULL , '0', '0', '1.0000', NULL, 0.01, NULL); in /home/content/94/10567094/html/includes/classes/db/mysql/query_factory.php on line 120

I am not sure what this means. Any help?