While the installation of the files went smoothly after the integration, when I went into admin to run the full install SQL file, admin stated that there was an error and to reload the page. When that failed, I checked the log and got the following error message.
[21-Jul-2014 21:10:35 America/Chicago] PHP Fatal error: 1054:Unknown column 'COWOA_account' in 'where clause' :: select count(*) as count from customers WHERE COWOA_account = '0' ==> (as called by) /home1/godsglor/public_html/develop/shop/admin/index.php on line 53 <== in /home1/godsglor/public_html/develop/shop/includes/classes/db/mysql/query_factory.php on line 155
I was still able to access the Install SQL Patches item from the Tools menu to upload the SQL file. After that, all was well. I'm not certain if it would be better to have the users install the SQL before uploading the modified files. While it didn't freak me out, it might concern others.

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