I have uploaded the file for this template to my store. After installing there are a few files that were skipped. Is this normal? Here is the message that i get from my ftp.

/apple_zen/header.php" was skipped because the old remote file could not be deleted.

/includes/modules/sideboxes/apple_zen/ezpages_drop_menu.php" was skipped because the old remote file could not be deleted.

/includes/templates/apple_zen/css/stylesheet_header_menu.css" was skipped because the old remote file could not be deleted.

/includes/templates/apple_zen/jscript/jscript_suckerfish.js" was skipped because the old remote file could not be deleted.

When I view my store i see the background and the header but the columns and sideboxes are not showing up. Is this because the files didnt load?