Just had a first play with this (very useful) plugin with one of Anne's templates (Westminster New).

Whilst all store side files are being cloned just fine, none of the template specific admin files of this template are being dealt with (4 files in my example such as files in admin/includes/auto_loaders, admin/includes/init_includes and another couple of files).

So, these files still need to be cloned manually. Are there any plans to get this implemented in future versions of this plugin?

Thanks / Frank